The chapel serves as the epicentre for the spiritual well being of the Santhomites. School Chapel is a quiet space within the busy school life, providing a sanctuary for reflection and thought. The beautiful Chapel centrally placed in the picturesque St. Thomas grounds has become the pivotal point for all the spiritual activities in the Campus. Evening service is conducted in the chapel on a daily basis and also Holy Communion service according to Mar Thoma rites on Sundays. The Chaplain is a friend, guide and mentor who imbues the students with faith, moral values and lofty ideals. He is in charge of the counseling centre which gives guidance to the students to cope with problems related to their growth process, family environment and inter- personal relationships.